PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G343200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB
Protein Properties Length: 457aa    MW: 51236.8 Da    PI: 6.7144
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G343200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-16160205147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Aqcoe3G343200.1.p 160 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 205
                        899*****************************.***********996 PP

2Myb_DNA-binding54.33e-17212255146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        r+++ +eE+e+l  a++++G++ W+ Iar ++ gRt++++k++w+ 
  Aqcoe3G343200.1.p 212 RKAFNEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNSVKNHWHV 255
                        7899******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.201155206IPR017930Myb domain
SMARTSM007173.3E-14159208IPR001005SANT/Myb domain
PfamPF002498.0E-16160205IPR001005SANT/Myb domain
SuperFamilySSF466894.03E-27160253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-25161213IPR009057Homeodomain-like
CDDcd001676.39E-13163204No hitNo description
PROSITE profilePS5129425.693207261IPR017930Myb domain
SMARTSM007173.9E-14211259IPR001005SANT/Myb domain
PfamPF002498.3E-14212254IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-20214260IPR009057Homeodomain-like
CDDcd001676.79E-11214254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MKMTLQQSNT TNFHQKNEGM LSTNNKYSIY AQEYCSSSNG LNNNNQASTF SSSTPSSSSS  60
VSLFADMGSL SINSNRKSCW SSFPFIGNNT TNSCLDDAQN SEGGDGKCSD FSDGFEENNA  120
AMEDNNTNNN VMNFNEENPN ENCANGKEID SSGQSKLCAR GHWRPAEDTK LKELVALYGP  180
QNWNLIAEKL EGRSGKSCRL RWFNQLDPRI NRKAFNEEEE ERLMAAHRLY GNKWAMIARL  240
FPGRTDNSVK NHWHVIMARK YREQSSAYRR RKLSQAVHRR MDENGRSSEP NNPNLSNNGS  300
FNSTSTFPFG GYIGGVSNDS VSSCRDKLVV ASSNIHSHSH RLPQHIHNGF CAEETPFDFF  360
SGPKNQDMTS YFNQNRSWDR QGDDSTYNGF YTHHPPLMVA MQQANQQHYP IYFSDSKTST  420
SHVSVNEASS SSIEETNHFE TTISPPFIDF LGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-311602607107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257780.11e-178PREDICTED: uncharacterized protein LOC104597747
TrEMBLF6HPQ31e-151F6HPQ3_VITVI; Putative uncharacterized protein
STRINGVIT_01s0026g02600.t011e-151(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-75myb domain protein 105